Index A | B | C | D | E | F | G | H | I | J | L | M | N | O | P | R | S | T | W | Y | Z A Ansible B boundary conditions Dirichlet Neumann no-flux tracer C capillary pressure linear table Van Genuchten zero checkpoints conservation equations fluid tracer CREDO D Docker configuring file paths installation options Python running, [1], [2] E equation of state (EOS), [1] water ("w") water / air / carbon dioxide ("wce") water / air / energy ("wae") water / energy ("we") water / salt / air / energy ("wsae") water / salt / carbon dioxide / energy ("wsce") water / salt / energy ("wse") F fractured media FSON linking G gravity groups H HDF5 cell_fields group, [1] index datasets, [1] MINC datasets ordering scripting source_fields group structure time viewers I importing JSON mesh initial conditions default in JSON input file MINC, [1] restarting tracer input installation interpolation tables averaging interpolation J Jacobian JSON arrays boolean data structures editing importing layout null numbers objects schema, [1] scripting strings structure validation L log output disabling message format, [1] message structure scripting YAML M mesh 2-D Cartesian 2-D radial 3-D Cartesian cell ordering coordinate systems creating faces formats importing MINC orthogonality partitioning rebalancing zones MINC geometry initial conditions, [1] output rock properties zones N non-linear equations numerical methods backwards Euler BDF2 finite volume discretisation, [1] function evaluations linear equations, [1], [2] non-linear equations, [1] time evolution, [1], [2] O output cells, [1] checkpoint fields final fluid flushing flux HDF5 index datasets, [1] initial log mesh geometry MINC ordering regular scripting source network sources, [1] structure time tracers, [1], [2] viewing P permeability modification PETSc KSP, [1] linking SNES, [1] primary variables, [1] scaling PyWaiwera installation waiwera-dkr R reinjectors file output input name outputs outside model overflow relative permeability Corey fully mobile Grant linear Pickens table Van Genuchten rock capillary pressure permeability permeability direction properties relative permeability time-dependent properties types running Docker native Linux executable number of processes, [1] parameters Waiwera S scripting JSON output setup separators, [1] simulation boundary conditions EOS gravity initial conditions mesh rock properties source networks sources thermodynamics title solver linear, [1], [2] non-linear, [1] source controls combining deliverability direction factor injectivity limiter recharge table source groups file output inputs limiters name output scaling separators source networks groups reinjectors source reinjectors output sources controls injection mixed flow names production separators tracer T testing benchmark unit tests thermodynamics IAPWS-97 IFC-67 primary variables regions time start steady state stepping stop time step adaptive methods reductions sizes tracers boundary conditions conservation equations initial conditions output, [1] sources temperature-dependent decay W Waiwera building input installation JSON file structure license name numerical methods running setting path simulation Y YAML Z Zofu linking zones box cell array combining